Presents recent research and new data in plant epigenetics, and characterizes and discusses all players in epigenetics: DNA methylation, RNA modification, ncRNA, chromatin modification and remodeling
Discusses various approaches aimed at specific gene targeting to induce loss or gain of function
Presents possible applications of epigenetics in agriculture
Prof. Dr. Nikolaus Rajewsky,Berlin Inst. for Medical Systems Biology,
MaxDelbrückCenter for Molecular Medicine,
Berlin-Buch,
Germany
rajewsky@mdc-berlin.de
Prof. Dr. Stefan Jurga,
Adam Mickiewicz University,
Nanobiomedical Center,
Poznan,
Poland
stjurga@amu.edu.pl
Prof. Dr. Jan Barciszewski,
Polish Academy of Sciences,
Institute of Bioorganic Chemistry,
Poznan,
Poland
jan.barciszewski@ibch.poznan.pl
This book presents, in 26 chapters, the status quo in epigenomic profiling. It discusses how functional information can be indirectly inferred and describes the new approaches that promise functional answers, collectively referred to as epigenome editing. It highlights the latest important advances in our understanding of the functions of plant epigenomics and new technologies for the study of epigenomic marks and mechanisms in plants. Topics include the deposition or removal of chromatin modifications and histone variants, the role of epigenetics in development and response to environmental signals, natural variation and ecology, as well as applications for epigenetics in crop improvement. Discussing areas ranging from the complex regulation of stress and heterosis to the precise mechanisms of DNA and histone modifications, it presents breakthroughs in our understanding of complex phenotypic phenomena.
1. Conservation, Divergence and Abundance of MiRNAs and Their Effect in Plants
Flor de Fátima Rosas-Cárdenas, and Stefan de Folter
2. The Role of MiRNAs in Auxin Signaling and Regulation During Plant Development
Clelia De-la-Peña, Geovanny I. Nic-Can, Johny Avilez-Montalvo, José E. Cetz-Chel and Víctor M. Loyola-Vargas
3. Growing Diversity of Plant MicroRNAs and MIR-Derived Small RNAs
Mariyana Gozmanova, Vesselin Baev, Elena Apostolova, Gaurav Sablok, and GalinaYahubyan
4. An Evolutionary View of the Biogenesis and Function of Rice Small RNAs
Tian Tang, Ming Wen, Pei Lin, and Yushuai Wang
5. Small RNAs: Master regulators of epigenetic silencing in plants
Rajeev Kumar Sarma, Safia, Ramalingam Sathishkumar
6. Small RNA biogenesis and degradation in plants
Qiming Yu, Yaling Li, Mu Li, and Bin Yu
7. Plant Epigenetics: Non-Coding RNAs as Emerging Regulators
Juan Sebastian Ramirez-Prado, Federico Ariel, Moussa Benhamed, and Martin Crespi
8. Genome-Wide Function Analysis of LincRNAs as MiRNA Targets or Decoys in Plant
Guanglin Li, Zhiqiang Hao, Chunyan Fan, and Xianmiao Wu
9. Plant Noncoding RNAs and the New Paradigms
Rodrigo Siqueira Reis and Jules Deforges
10. Epigenetic Regulation by Non-Coding RNAs in Plant Development
Zhang Yu-Chan and Chen Yue-Qin
11. RNAi Suppressors: Biology and Mechanisms
Neeti Sanan-Mishra, Supriya Chakraborty, Dinesh Gupta, Sunil Kumar Mukherjee
12. Analysis of Nucleic Acids Methylation in Plants
Bi-Feng Yuan
13. DNA Methylation in Plants by MicroRNAs
Sachin Teotia, Deepali Singh, and Guiliang Tang
14. DNA Methylation in Plants and its Implications in Development, Hybrid Vigor and Evolution
Annalisa Varriale
15. Dynamic DNA Methylation Patterns in Stress Response
Luigi Viggiano and Maria Concetta de Pinto
16. Locus-specific DNA methylation analysis and applications to plants
Alexandre How-Kit, Emeline Teyssier, Jean-François Deleuze, and Philippe Gallusci
17. Epigenetics in Plant Reproductive Development: An Overview from Flowers to Seeds
Antoine L.F. Gady, Cristiane S. Alves, Fabio T.S. Nogueira
18. Epigenetic Regulation of Phase Transitions in Arabidopsis thaliana
Inês Trindade, Daniel Schubert, and Valérie Gaudin
19. Epigenetics in Plant-Pathogen Interactions
Giorgio Gambino, and Vitantonio Pantaleo
20. Epigenetic Reprogramming During Plant Reproduction
Jer-Young Lin, and Tzung-Fu Hsieh
21. Rice Epigenomics: how does Epigenetic Manipulation of Crops Contribute to Agriculture?
Yoshiki Habu
22. Epigenetic Characterization of Satellite DNA in Sugar Beet (Beta vulgaris)
Falk Zakrzewski, and Thomas Schmidt
23. Universal and Lineage-specific Properties of Linker Histones and SWI/SNF-chromatin Remodeling Complexes in Plants
Andrzej Jerzmanowski, and Rafal Archacki
24. Abiotic Stress Induced Epigenetic Modifications in Plants: How Much do we Know?
Sonali Bej, and Jolly Basak
25. Apple Latent Spherical Virus (ALSV) Vector as a Tool for Reverse Genetic Studies and Non-Transgenic Breeding of a Variety of Crops
Ichiro Kasajima, Makoto Ito, Noriko Yamagishi, Nobuyuki Yoshikawa
Chapter 1: Conservation, Divergence and Abundance of MiRNAs and Their Effect in Plants.- Chapter 2: The Role of MiRNAs in Auxin Signaling and Regulation During Plant Development.- Chapter 3: Growing Diversity of Plant MicroRNAs and MIR-Derived Small RNAs.- Chapter 4: An Evolutionary View of the Biogenesis and Function of Rice Small RNAs.- Chapter 5: Small RNAs: Master regulators of epigenetic silencing in plants.- Chapter 6: Small RNA biogenesis and degradation in plants.- Chapter 7: Plant Epigenetics: Non-Coding RNAs as Emerging Regulators.- Chapter 8: Genome-Wide Function Analysis of LincRNAs as MiRNA Targets or Decoys in Plant.- Chapter 9: Plant Noncoding RNAs and the New Paradigms.- Chapter 10: Epigenetic Regulation by Non-Coding RNAs in Plant Development.- Chapter 11: RNAi Suppressors: Biology and Mechanisms.- Chapter 12: Analysis of Nucleic Acids Methylation in Plants.- Chapter 13: DNA Methylation in Plants by MicroRNAs.- Chapter 14: DNA Methylation in Plants and its Implicationsin Development, Hybrid Vigor and Evolution.- Chapter 15: Dynamic DNA Methylation Patterns in Stress Response.- Chapter 16: Locus-specific DNA methylation analysis and applications to plants.- Chapter 17: Epigenetics in Plant Reproductive Development: An Overview from Flowers to Seeds.- Chapter 18: Epigenetic Regulation of Phase Transitions in Arabidopsis thaliana.- Chapter 19: Epigenetics in Plant-Pathogen Interactions.- Chapter 20: Epigenetic Reprogramming During Plant Reproduction.- Chapter 21: Rice Epigenomics: how does Epigenetic Manipulation of Crops Contribute to Agriculture?.- Chapter 22: Epigenetic Characterization of Satellite DNA in Sugar Beet (Beta vulgaris).- Chapter 23: Universal and Lineage-specific Properties of Linker Histones and SWI/SNF-chromatin Remodeling Complexes in Plants.- Chapter 24: Abiotic Stress Induced Epigenetic Modifications in Plants: How Much do we Know?.- Chapter 25: Apple Latent Spherical Virus (ALSV) Vector as a Tool for Reverse Genetic Studies andNon-Transgenic Breeding of a Variety of Crops.
Über den Autor
Inhaltsverzeichnis
Chapter 1: Conservation, Divergence and Abundance of MiRNAs and Their Effect in Plants.- Chapter 2: The Role of MiRNAs in Auxin Signaling and Regulation During Plant Development.- Chapter 3: Growing Diversity of Plant MicroRNAs and MIR-Derived Small RNAs.- Chapter 4: An Evolutionary View of the Biogenesis and Function of Rice Small RNAs.- Chapter 5: Small RNAs: Master regulators of epigenetic silencing in plants.- Chapter 6: Small RNA biogenesis and degradation in plants.- Chapter 7: Plant Epigenetics: Non-Coding RNAs as Emerging Regulators.- Chapter 8: Genome-Wide Function Analysis of LincRNAs as MiRNA Targets or Decoys in Plant.- Chapter 9: Plant Noncoding RNAs and the New Paradigms.- Chapter 10: Epigenetic Regulation by Non-Coding RNAs in Plant Development.- Chapter 11: RNAi Suppressors: Biology and Mechanisms.- Chapter 12: Analysis of Nucleic Acids Methylation in Plants.- Chapter 13: DNA Methylation in Plants by MicroRNAs.- Chapter 14: DNA Methylation in Plants and its Implicationsin Development, Hybrid Vigor and Evolution.- Chapter 15: Dynamic DNA Methylation Patterns in Stress Response.- Chapter 16: Locus-specific DNA methylation analysis and applications to plants.- Chapter 17: Epigenetics in Plant Reproductive Development: An Overview from Flowers to Seeds.- Chapter 18: Epigenetic Regulation of Phase Transitions in Arabidopsis thaliana.- Chapter 19: Epigenetics in Plant-Pathogen Interactions.- Chapter 20: Epigenetic Reprogramming During Plant Reproduction.- Chapter 21: Rice Epigenomics: how does Epigenetic Manipulation of Crops Contribute to Agriculture?.- Chapter 22: Epigenetic Characterization of Satellite DNA in Sugar Beet (Beta vulgaris).- Chapter 23: Universal and Lineage-specific Properties of Linker Histones and SWI/SNF-chromatin Remodeling Complexes in Plants.- Chapter 24: Abiotic Stress Induced Epigenetic Modifications in Plants: How Much do we Know?.- Chapter 25: Apple Latent Spherical Virus (ALSV) Vector as a Tool for Reverse Genetic Studies andNon-Transgenic Breeding of a Variety of Crops.
Klappentext
This book presents, in 26 chapters, the status quo in epigenomic profiling. It discusses how functional information can be indirectly inferred and describes the new approaches that promise functional answers, collectively referred to as epigenome editing. It highlights the latest important advances in our understanding of the functions of plant epigenomics and new technologies for the study of epigenomic marks and mechanisms in plants. Topics include the deposition or removal of chromatin modifications and histone variants, the role of epigenetics in development and response to environmental signals, natural variation and ecology, as well as applications for epigenetics in crop improvement. Discussing areas ranging from the complex regulation of stress and heterosis to the precise mechanisms of DNA and histone modifications, it presents breakthroughs in our understanding of complex phenotypic phenomena.
Presents recent research and new data in plant epigenetics, and characterizes and discusses all players in epigenetics: DNA methylation, RNA modification, ncRNA, chromatin modification and remodeling
Discusses various approaches aimed at specific gene targeting to induce loss or gain of function
Presents possible applications of epigenetics in agriculture
Includes supplementary material: sn.pub/extras
